Preheat the oven to 375°F. Spray a 12 cup muffin tin with non-stick baking spray or line with paper liners.
In a large bowl, mix together the flours, oats, sugar, baking powder, baking soda, salt, cinnamon, nutmeg, cloves, and ginger. Drop in the raisins and toss them in the flour mixture.
In a medium bowl, mix together the almond milk and vinegar, then add the egg, applesauce, vanilla, and coconut oil. Whisk all of the ingredients together until combined.
Pour the wet ingredients into the dry ingredients and stir just until mixed.
Using a measuring cup, pour the batter into the muffin tin equally, about 2/3 of the way full each.
Bake for 14-16 minutes or until a toothpick inserted into the center of a muffin comes out clean.
Cool in the tray for 5 minutes before transferring to a wire rack to finish cooling.